TMM@: a web application for the analysis of transmembrane helix mobility

BMC Bioinformatics

Table 1 Table 1

Helix id (TMM@)	first aa – last aa	Correction by user	Name
3	55–79	48–79	M1
4	86–118	-	M2
9	248–274	-	M3
12	290–307	289–329	M4
17	440–453	Not in TM bundle
25	629–640	Not in TM bundle
31	740–782	-	M5
32	789–800	788–808	M6
34	831–857	-	M7
38	894–912	-	M8
41	931–950	-	M9
43	964–975	963–992	M10
44	976–992	Into helix 43

α-helices of the SERCA1 Ca-ATPase. List of α-helices identified by TMM@ as being transmembrane helices (Cf. Figure 2b); first and last residues are given in the second column. Corrections to be made by the user are listed in the third column. Correspondence with the usual nomenclature for the calcium pump (M1 to M10) is given in the fourth column.

ISSN: 1471-2105