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Table 5 Data included in the benchmark calculation.

From: Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

HLA-DR alleles IEDB # Binders SYFPEITHI
DRB1*0101 1203 920 33
DRB1*0301 474 65 22
DRB1*0401 457 209 65
DRB1*0404 168 74 23
DRB1*0405 171 88 23
DRB1*0701 310 125 34
DRB1*0802 174 58 1
DRB1*0901 117 47 13
DRB1*1101 359 95 23
DRB1*1302 179 101 20
DRB1*1501 365 188 12
DRB3*0101 102 3 2
DRB4*0101 181 74 5
DRB5*0101 343 112 11
H2-IAb 76 43 47
H2-IAd 342 56 7
H2-IAs 126 35 19
  1. The first column gives the allele name, the second to fourth columns the number of unique peptide data, and binders included for each allele in the IEDB [13] and SYFPEITHI [33] databases, respectively. Binding peptides were identified using an IC50 binding threshold of 500 nM.