Table 6 False positive rates. False positive rates at various tolerances (values reported in percentages).
From: The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments
| Â | Mass tolerance: 100 ppm | Mass tolerance: 50 ppm | Mass tolerance: 30 ppm | Mass tolerance: 15 ppm |
|---|---|---|---|---|
RT tolerance: 5 min | 22.1% | 15.8% | 10.2% | 4.2% |
RT tolerance: 3 min | 15.7% | 12.4% | 7.7% | 2.7% |
RT tolerance: 1.5 min | 13.1% | 10.7% | 6.0% | 0.7% |
RT tolerance: 0.75 min | 16.1% | 14.9% | 5.4% | 2.4% |