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Table 2 Performance of the five methods in simulation

From: Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data

 

Method of Analysis

Percentage arrays damaged

Single Channel

Unaffected Data

Inclusive

Combined (kest)

Combined (kfix = 0.5)

Combined (kfix = 0.25)

20

85,780

88,197

86,899

88,393

87,763

88,017

40

85,776

86,592

84,557

88,296

87,317

87,704

60

85,799

83,958

82,650

88,054

86,765

87,402

80

85,893

78,134

80,411

87,252

86,016

86,848

All Simulations

343,248

336,881

334,517

351,995

347,861

349,971

  1. Presented are the numbers of differentially expressed genes that would be identified by taking a list of the top 4,000 genes in each case. Recall that there are indeed 4,000 differentially expressed genes, so the numbers are out of 100,000 (25 times 4,000) for the sub experiments and out of 400,000 (100 times 4,000) overall.