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Table 2 Performance of the five methods in simulation

From: Missing channels in two-colour microarray experiments: Combining single-channel and two-channel data

  Method of Analysis
Percentage arrays damaged Single Channel Unaffected Data Inclusive Combined (kest) Combined (kfix = 0.5) Combined (kfix = 0.25)
20 85,780 88,197 86,899 88,393 87,763 88,017
40 85,776 86,592 84,557 88,296 87,317 87,704
60 85,799 83,958 82,650 88,054 86,765 87,402
80 85,893 78,134 80,411 87,252 86,016 86,848
All Simulations 343,248 336,881 334,517 351,995 347,861 349,971
  1. Presented are the numbers of differentially expressed genes that would be identified by taking a list of the top 4,000 genes in each case. Recall that there are indeed 4,000 differentially expressed genes, so the numbers are out of 100,000 (25 times 4,000) for the sub experiments and out of 400,000 (100 times 4,000) overall.