Figure 4
From: Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets
Coverage of the surface of the receptors. Two examples of decoy structure series, along with their native structures: 1ARO (top) and 1BJF (bottom). In each case, the native complex is shown. One partner (the 'A' receptor) is arbitrarily taken as a reference (orange ribbon). The second partner (the 'B' ligand) is shown as a cyan tube. The decoys corresponding to B are schematized by sticks; constructed from the center of mass and an arbitrary atom in the decoy structure.