Skip to main content

Table 2 Two- and three-class energy parameters for fold recognition and dimer interface recognition. Best parameters (kcal/mol) for monomeric fold recognition (upper right) and dimer interface recognition (lower left).

From: Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets

  

H

P

Monomeric

  

-8.5

9.0

H = {ALSVTPIGMCFYW}

H

-9.0

 

-3.5

P = {EKRHDNQ}

P

9.8

-7.1

   

Dimeric

H

P

   
  

H a

H b

P

Monomeric

  

-4.7

-9.6

6.4

H a = {ALSVTPIGMC}

H a

-3.8

 

-11.4

1.5

H b = {FYW}

H b

-8.4

-14.3

 

-1.9

P = {EKRHDNQ}

P

4.8

2.4

-1.5

  

Dimeric

H a

H b

P