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Table 2 Two- and three-class energy parameters for fold recognition and dimer interface recognition. Best parameters (kcal/mol) for monomeric fold recognition (upper right) and dimer interface recognition (lower left).

From: Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets

   H P Monomeric
   -8.5 9.0 H = {ALSVTPIGMCFYW}
H -9.0   -3.5 P = {EKRHDNQ}
P 9.8 -7.1    
Dimeric H P    
   H a H b P Monomeric
   -4.7 -9.6 6.4 H a = {ALSVTPIGMC}
H a -3.8   -11.4 1.5 H b = {FYW}
H b -8.4 -14.3   -1.9 P = {EKRHDNQ}
P 4.8 2.4 -1.5   
Dimeric H a H b P