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Table 4 Dimer interface recognition: performance of the energy functions

From: Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets

Number of amino acid groups

Optimization Set 1a

Optimization Set 2b

 

Opt.c

Test.d

Opt.c

Testd

 

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2

89.4

90.7

87.5

46.7

90.1

90.1

87.2

47.3

3

93.0

92.7

89.0

50.5

93.0

92.7

89.9

56.4

4

97.9

96.7

93.5

60.7

97.9

97.2

94.6

68.2

6

98.0

97.0

93.7

63.5

98.0

97.7

95.4

69.1

20

99.1

97.6

93.9

67.3

98.7

98.2

94.8

69.1

20/Bastollae

-

-

96.5

56.4

-

-

93.3

62.6

20/Lue

-

-

93.6

63.6

-

-

93.5

63.5

  1. aResults for the parameter sets produced with OS1. bResults for the parameter sets produced with OS2. cResults on the Optimization set. dResults on the Test set. e Q ¯ i n t MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGrbqugaqeamaaBaaaleaacqWGPbqAcqWGUbGBcqWG0baDaeqaaaaa@324C@ and D int include only the performance for interface recognition (the fold recognition statistics are left out). eWith the Bastolla or Lu energy functions.