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Table 3 PA flagged probesets with > 8 fold differential expression according to MAS5 and less than 2 fold according to RMA.

From: The utility of MAS5 expression summary and detection call algorithms

Probeset ID f.c. ttest mcf7 mcf10a gene name
1553494_at 5.03 ± 0.59 0.00 4.05 -0.97 TDH
210833_at 4.69 ± 0.53 0.00 4.37 -0.32 PTGER3
1564699_at 4.56 ± 0.67 0.01 4.10 -0.46 C5orf4
222136_x_at 4.04 ± 0.54 0.00 7.62 3.58 ZNF43
1558687_a_at 3.86 ± 0.67 0.00 4.23 0.38 NA
228811_at 3.84 ± 0.56 0.00 4.33 0.48 PLA2G5
214761_at 3.59 ± 0.56 0.00 4.63 1.04 ZNF423
207886_s_at 3.58 ± 0.25 0.02 4.74 1.17 CALCR
217681_at 3.40 ± 1.28 0.00 5.66 2.26 WNT7B
210100_s_at 3.38 ± 0.98 0.00 6.48 3.11 ABCA2
205501_at 3.34 ± 1.23 0.04 3.58 0.25 NA
243580_at 3.29 ± 0.75 0.01 4.61 1.32 GNA14
214191_at 3.26 ± 0.68 0.00 5.07 1.81 ICA1
243650_at 3.20 ± 1.51 0.03 4.96 1.76 PLEKHH2
231795_at 3.19 ± 1.08 0.00 4.48 1.29 NA
230917_at 3.16 ± 1.19 0.03 4.34 1.18 NA
228090_at 3.13 ± 0.52 0.01 5.86 2.73 NMNAT3
216061_x_at 3.13 ± 0.63 0.00 6.35 3.22 PDGFB
243804_at 3.12 ± 0.57 0.01 4.12 1.00 FLJ32642
204778_x_at 3.09 ± 1.25 0.01 6.09 3.00 HOXB7
241744_x_at 3.08 ± 0.52 0.04 3.63 0.54 NA
226086_at 3.05 ± 0.49 0.00 4.18 1.13 SYT13
1569701_at 3.03 ± 0.47 0.04 3.91 0.89 PER3
225163_at 3.01 ± 0.72 0.01 5.05 2.03 FRMD4A
204885_s_at -3.22 ± 0.40 0.01 2.70 5.92 MSLN
214587_at -3.27 ± 0.28 0.03 0.64 3.92 COL8A1
233792_at -3.31 ± 0.61 0.00 0.51 3.82 NA
205964_at -3.44 ± 0.45 0.02 1.22 4.66 ZNF426
219983_at -3.47 ± 0.27 0.00 0.73 4.20 HRASLS
239955_at -3.47 ± 0.84 0.00 0.48 3.95 NA
1563693_at -3.50 ± 0.30 0.00 0.13 3.63 NA
1553574_at -3.59 ± 1.10 0.00 -0.20 3.39 IFNE1
219058_x_at -3.70 ± 1.22 0.01 2.46 6.16 LCN7
228821_at -3.75 ± 0.43 0.01 -0.17 3.58 ST6GAL2
1564796_at -3.87 ± 0.28 0.01 0.80 4.68 EMP1
225372_at -4.07 ± 0.39 0.00 0.74 4.82 C10orf54
1556773_at -4.14 ± 1.39 0.00 0.10 4.24 PTHLH
1562648_at -4.17 ± 0.84 0.00 0.10 4.28 KIAA1212
1558512_at -4.29 ± 1.38 0.00 -0.32 3.97 NA
1553654_at -4.45 ± 0.70 0.00 -0.97 3.48 SYT14
  1. f.c.: log2 fold change, ± standard error. t-test: t-test p-score between replicates. MCF7, MCF10a: log2 mean expression level. Probesets marked in bold type were validated by real time PCR.