TY - JOUR AU - Velculescu, V. E. AU - Zhang, L. AU - Vogelstein, B. AU - Kinzler, K. W. PY - 1995 DA - 1995// TI - Serial analysis of gene expression JO - Science VL - 270 UR - https://doi.org/10.1126/science.270.5235.484 DO - 10.1126/science.270.5235.484 ID - Velculescu1995 ER - TY - JOUR AU - Saha, S. AU - Sparks, A. B. AU - Rago, C. AU - Akmaev, V. AU - Wang, C. J. AU - Vogelstein, B. AU - Kinzler, K. W. AU - Velculescu, V. E. PY - 2002 DA - 2002// TI - Using the transcriptome to annotate the genome JO - Nature biotechnology VL - 20 UR - https://doi.org/10.1038/nbt0502-508 DO - 10.1038/nbt0502-508 ID - Saha2002 ER - TY - JOUR AU - Matsumura, H. AU - Reich, S. AU - Ito, A. AU - Saitoh, H. AU - Kamoun, S. AU - Winter, P. AU - Kahl, G. AU - Reuter, M. AU - Kruger, D. H. AU - Terauchi, R. PY - 2003 DA - 2003// TI - Gene expression analysis of plant host-pathogen interactions by SuperSAGE JO - Proceedings of the National Academy of Sciences of the United States of America VL - 100 UR - https://doi.org/10.1073/pnas.2536670100 DO - 10.1073/pnas.2536670100 ID - Matsumura2003 ER - TY - JOUR AU - Baggerly, K. A. AU - Deng, L. AU - Morris, J. S. AU - Aldaz, C. M. PY - 2003 DA - 2003// TI - Differential expression in SAGE: accounting for normal between-library variation JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg173 DO - 10.1093/bioinformatics/btg173 ID - Baggerly2003 ER - TY - JOUR AU - Baggerly, K. A. AU - Deng, L. AU - Morris, J. S. AU - Aldaz, C. M. PY - 2004 DA - 2004// TI - Overdispersed logistic regression for SAGE: modelling multiple groups and covariates JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-144 DO - 10.1186/1471-2105-5-144 ID - Baggerly2004 ER - TY - JOUR AU - Lu, J. AU - Tomfohr, J. K. AU - Kepler, T. B. PY - 2005 DA - 2005// TI - Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-165 DO - 10.1186/1471-2105-6-165 ID - Lu2005 ER - TY - JOUR AU - Vencio, R. Z. AU - Brentani, H. AU - Patrao, D. F. AU - Pereira, C. A. PY - 2004 DA - 2004// TI - Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE) JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-119 DO - 10.1186/1471-2105-5-119 ID - Vencio2004 ER - TY - CHAP AU - McLachlan, G. J. AU - Peel, D. PY - 2000 DA - 2000// BT - Finite mixture models PB - Wiley CY - New York UR - https://doi.org/10.1002/0471721182 DO - 10.1002/0471721182 ID - McLachlan2000 ER - TY - JOUR AU - Akaike, H. PY - 1974 DA - 1974// TI - A new look at the statistical model identification JO - IEEE Transactions on Automatic Control VL - 19 UR - https://doi.org/10.1109/TAC.1974.1100705 DO - 10.1109/TAC.1974.1100705 ID - Akaike1974 ER - TY - JOUR AU - Schwarz, G. PY - 1978 DA - 1978// TI - Estimating the dimension of a model JO - Annals of Statistics VL - 6 UR - https://doi.org/10.1214/aos/1176344136 DO - 10.1214/aos/1176344136 ID - Schwarz1978 ER - TY - JOUR AU - Kuznetsov, V. A. AU - Knott, G. D. AU - Bonner, R. F. PY - 2002 DA - 2002// TI - General statistics of stochastic process of gene expression in eukaryotic cells JO - Genetics VL - 161 ID - Kuznetsov2002 ER - TY - JOUR AU - Thygesen, H. H. AU - Zwinderman, A. H. PY - 2006 DA - 2006// TI - Modeling Sage data with a truncated gamma-Poisson model JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-157 DO - 10.1186/1471-2105-7-157 ID - Thygesen2006 ER - TY - JOUR AU - Edgar, R. AU - Domrachev, M. AU - Lash, A. E. PY - 2002 DA - 2002// TI - Gene Expression Omnibus: NCBI gene expression and hybridization array data repository JO - Nucleic acids research VL - 30 UR - https://doi.org/10.1093/nar/30.1.207 DO - 10.1093/nar/30.1.207 ID - Edgar2002 ER - TY - JOUR AU - Cornelissen, M. AU - van der Kuyl, A. C. AU - van den Burg, R. AU - Zorgdrager, F. AU - van Noesel, C. J. AU - Goudsmit, J. PY - 2003 DA - 2003// TI - Gene expression profile of AIDS-related Kaposi's sarcoma JO - BMC Cancer VL - 3 UR - https://doi.org/10.1186/1471-2407-3-7 DO - 10.1186/1471-2407-3-7 ID - Cornelissen2003 ER - TY - JOUR AU - van Ruissen, F. AU - Jansen, B. J. AU - de Jongh, G. J. AU - Zeeuwen, P. L. AU - Schalkwijk, J. PY - 2002 DA - 2002// TI - A partial transcriptome of human epidermis JO - Genomics VL - 79 UR - https://doi.org/10.1006/geno.2002.6756 DO - 10.1006/geno.2002.6756 ID - van Ruissen2002 ER - TY - JOUR AU - Weeraratna, A. T. AU - Becker, D. AU - Carr, K. M. AU - Duray, P. H. AU - Rosenblatt, K. P. AU - Yang, S. AU - Chen, Y. AU - Bittner, M. AU - Strausberg, R. L. AU - Riggins, G. J. PY - 2004 DA - 2004// TI - Generation and analysis of melanoma SAGE libraries: SAGE advice on the melanoma transcriptome JO - Oncogene VL - 23 UR - https://doi.org/10.1038/sj.onc.1207337 DO - 10.1038/sj.onc.1207337 ID - Weeraratna2004 ER - TY - JOUR AU - Porter, D. AU - Lahti-Domenici, J. AU - Keshaviah, A. AU - Bae, Y. K. AU - Argani, P. AU - Marks, J. AU - Richardson, A. AU - Cooper, A. AU - Strausberg, R. AU - Riggins, G. J. PY - 2003 DA - 2003// TI - Molecular markers in ductal carcinoma in situ of the breast JO - Mol Cancer Res VL - 1 ID - Porter2003 ER - TY - JOUR AU - Porter, D. AU - Weremowicz, S. AU - Chin, K. AU - Seth, P. AU - Keshaviah, A. AU - Lahti-Domenici, J. AU - Bae, Y. K. AU - Monitto, C. L. AU - Merlos-Suarez, A. AU - Chan, J. PY - 2003 DA - 2003// TI - A neural survival factor is a candidate oncogene in breast cancer JO - Proceedings of the National Academy of Sciences of the United States of America VL - 100 UR - https://doi.org/10.1073/pnas.1932980100 DO - 10.1073/pnas.1932980100 ID - Porter2003 ER - TY - JOUR AU - Porter, D. A. AU - Krop, I. E. AU - Nasser, S. AU - Sgroi, D. AU - Kaelin, C. M. AU - Marks, J. R. AU - Riggins, G. AU - Polyak, K. PY - 2001 DA - 2001// TI - A SAGE (serial analysis of gene expression) view of breast tumor progression JO - Cancer Res VL - 61 ID - Porter2001 ER - TY - JOUR AU - Lee, S. AU - Chen, J. AU - Zhou, G. AU - Shi, R. Z. AU - Bouffard, G. G. AU - Kocherginsky, M. AU - Ge, X. AU - Sun, M. AU - Jayathilaka, N. AU - Kim, Y. C. PY - 2006 DA - 2006// TI - Gene expression profiles in acute myeloid leukemia with common translocations using SAGE JO - Proceedings of the National Academy of Sciences of the United States of America VL - 103 UR - https://doi.org/10.1073/pnas.0509878103 DO - 10.1073/pnas.0509878103 ID - Lee2006 ER - TY - JOUR AU - Boon, K. AU - Edwards, J. B. AU - Eberhart, C. G. AU - Riggins, G. J. PY - 2004 DA - 2004// TI - Identification of astrocytoma associated genes including cell surface markers JO - BMC Cancer VL - 4 UR - https://doi.org/10.1186/1471-2407-4-39 DO - 10.1186/1471-2407-4-39 ID - Boon2004 ER - TY - CHAP PY - 2006 DA - 2006// TI - A Language and Environment for Statistical Computing BT - R Foundation for Statistical Computing ID - ref22 ER - TY - CHAP AU - Venables, W. N. AU - Ripley, B. D. PY - 2002 DA - 2002// BT - Modern Applied Statistics with S PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-21706-2 DO - 10.1007/978-0-387-21706-2 ID - Venables2002 ER - TY - JOUR AU - Dempster, A. AU - Laird, N. AU - Rubin, D. PY - 1977 DA - 1977// TI - Maximum Likelihood from Incomplete Data via the EM-Algorithm JO - Journal of the Royal Statistical Society Series B (Methodological) VL - 39 ID - Dempster1977 ER - TY - CHAP AU - Leisch, F. PY - 2004 DA - 2004// TI - FlexMix: A general framework for finite mixture models and latent class regression in R BT - Journal of Statistical Software ID - Leisch2004 ER -