From: CLUSS: Clustering of protein sequences based on a new similarity measure
Protein subsets | CLUSS | BLAST | MCL+ClustalW | SPC+ClustalW | ||||
---|---|---|---|---|---|---|---|---|
Nbr | Time | Nbr | Time | Nbr | Time | Nbr | Time | |
SS1 (469 proteins) | 30 | 106 | 114 | 14 | 1 | 495 | 9 | 499 |
SS2 (743 proteins) | 15 | 234 | 102 | 58 | 1 | 1272 | 33 | 1275 |
SS3 (455 proteins) | 30 | 114 | 132 | 18 | 8 | 586 | 27 | 588 |
SS4 (409 proteins) | 19 | 82 | 125 | 11 | 1 | 452 | 4 | 454 |
SS5 (564 proteins) | 35 | 103 | 172 | 15 | 6 | 538 | 30 | 540 |
SS6 (6444 proteins) | 225 | 4272 | 732 | 583 | 1 | 95895 | 77 | 98880 |