Table 1 Motifs for randomly generated sequences
From: rMotifGen: random motif generator for DNA and protein sequences
Seq. # | Motif 1 | Motif 2 | Motif 3 | Motif 4 | Motif 5 | Motif 6 |
|---|---|---|---|---|---|---|
CONS. | LYDVAEYAGVSYQTVSRVV | FAIVFVVAIA | KDKNPRNDRR | DYYISPQGKKFRSKPQ | VCVHQACYGILKV | PSSM |
1 | LYDVANYAGVNYQTVPRVV | YVICFVIQIK | GNKDMRAQRQ | DYYISPQGKKFRSKPQ | -- | DAHYVRVNYRF |
2 | LYDVAEYAGVSYQTVSRTV | YSLPYCLTKF | KNNFLPEDRK | GYYISPHGKKFRSKHQ | VCVHQACYGILKV | KTFYLGAGYRY |
3 | LYDVAEYAGVSYQTVSRVV | YALGGLIESA | NDRSNRGKPW | --- | VCVHQACYGILKV | KAVYAGLGVKF |
4 | LYDVADYAGVSYQAVSRVV | FDAGFVLPAT | HGTKSDKTIR | --- | VCVHQACYGILKV | DQVTLGAGMDF |
5 | LYNVAEYIGVSYNTVSRVV | AQIVVCLAGG | KEKIPKEVRK | --- | --- | DQYHASAGYKF |
6 | LYDVAEYAGVSYQTVSRVV | FGIVYVLANA | KDEDLRNSRR | DFYISAQGKKFRSKPQ | VCVHQACYGILKV | RNWYVRAGYDY |
7 | LYDVAEYAGVVYQTVSKVV | PSMLLFVEIA | KDKNNPNQSS | -- | VCVHQACYGILKV | NAVYIGLGVRY |
8 | LYDVAEYAGVSYQTVSRVV | FFVVFSVVIT | RQKNAEHDRR | -- | VCVHQACYGILKV | KTYHVGLGFDY |
9 | LYDVAEYNGISYEVVSRVV | DAIIFANNID | MEKNLWDERM | DYYISPQGKKFRVNPN | VCVHQACYGILKV | DAYYARAGVDF |
10 | LYDIAEYAGVSYQTVSRVV | FAMVIGVSIG | GKKEPRYEQP | DYYIWPKGKKFKSKPQ | VCVHQACYGILKV | PNYHAGLGLRY |