Skip to main content

Table 3 32 newly identified genes with highly conserved uORFs strongly predicted by the rule set to be functional (marked in bold), with an optimal spacing to the main ORF and other uORFs. Numbering of uORFs is 3' to 5', as uORFs were found from intergenic sequences.

From: Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation

ORF Name Length (nt) of intergenic sequence Number and size (codons) of uORFs Position (nt) relative to start codon of main ORF Predicted length (nt) of 5'-UTR [20]a
YDL146W LDB17 489 uORF1(3) -53 514
YDL176W Uncharacterised 376 uORF1(9) -104 157
YDL205C HEM3 860 uORF1(8) -130 183
YEL061C CIN8 509 uORF1(4) -109 128
YER167W BCK2 757 uORF1(7) -245 286
YGL006W PMC1 387 uORF1(4) -144 438
YJL139C YUR1 505 uORF1(8) -55 60
YKL182W FAS1 1030 uORF1(6) -142 548
YLR047C FRE8 825 uORF1(3) -230 264
YLR427W MAG2 315 uORF1(6) -71 109
YMR145C NDE1 1006 uORF1(4) -165 215
YNL053W MSG5 358 uORF1(4) -104 120
YNL094W APP1 771 uORF1(3) -155 278
YNR016C ACC1 1539 uORF1(3) -342 540
YOL100W PKH2 1317 uORF2(9)
uORF1(7)
-338
-81
255
YOL130W ALR1 1042 uORF1(5) -103 290
YOR061W CKA2 371 uORF1(5) -103 162
YOR124C UBP2 388 uORF1(7) -211 250
YOR137C SIA1 628 uORF1(9) -367 440
YOR231W MKK1 488 uORF1(9) -72 148
YOR254C SEC63 248 uORF1(5) -82 100
YPL057C SUR1 373 uORF1(5) -145 253
YPR026W ATH1 821 uORF1(4) -65 112
YER118C SHO1 441 uORF1(8) -212 206
YEL013W VAC8 541 uORF2(3)
uORF1(3)
-364
-306
252
YEL026W SNU13 692 uORF3(3)
uORF2(2)
uORF1(2)
-206
-198
-193
170
YLR009W RLP24 454 uORF1(3) -220 171
YLR243W Uncharacterised 320 uORF1(3) -111 80
YML093W UTP14 241 uORF1(4) -99 21
YMR215W GAS3 313 uORF1(4) -147 62
YNL229C URE2 457 uORF2(11)
uORF1(5)
-384
-285
217
YNR049C MSO1 393 uORF1(3) -142 123
  1. a Genes where predicted functional uORFs are located within the estimated 5'-UTR are marked in bold.