Prediction of the burial status of transmembrane residues of helical membrane proteins

BMC Bioinformatics

Table 6 Prediction accuracies obtained by SVR with different input vectors

Window size	Profile	Conservation index	PSSM (the YU method)
C – 1¹
11	70.87	73.68	70.08
13	71.16	73.65	69.47
15	71.51	74.16	71.06
17	71.19	74.16	68.23
19	70.91	74.41	61.85
21	70.84	74.19	59.46
C – 2
11	70.55	73.17	69.85
13	70.94	73.26	69.31
15	71.16	74.31	70.52
17	71.64	73.61	67.11
19	70.68	73.90	61.54
21	70.49	74.09	59.31
C – 5
11	70.36	72.37	69.79
13	71.19	72.53	69.12
15	70.91	73.36	70.43
17	71.32	72.72	66.92
19	70.46	73.07	61.60
21	70.59	72.85	59.18
C – 7
11	70.81	72.05	70.17
13	71.03	72.15	69.15
15	71.13	72.94	70.43
17	71.19	72.37	66.89
19	70.43	72.50	61.63
21	70.52	72.08	59.18

ISSN: 1471-2105