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Table 6 Prediction accuracies obtained by SVR with different input vectors

From: Prediction of the burial status of transmembrane residues of helical membrane proteins

Window size Profile Conservation index PSSM (the YU method)
C – 11
11 70.87 73.68 70.08
13 71.16 73.65 69.47
15 71.51 74.16 71.06
17 71.19 74.16 68.23
19 70.91 74.41 61.85
21 70.84 74.19 59.46
C – 2
11 70.55 73.17 69.85
13 70.94 73.26 69.31
15 71.16 74.31 70.52
17 71.64 73.61 67.11
19 70.68 73.90 61.54
21 70.49 74.09 59.31
C – 5
11 70.36 72.37 69.79
13 71.19 72.53 69.12
15 70.91 73.36 70.43
17 71.32 72.72 66.92
19 70.46 73.07 61.60
21 70.59 72.85 59.18
C – 7
11 70.81 72.05 70.17
13 71.03 72.15 69.15
15 71.13 72.94 70.43
17 71.19 72.37 66.89
19 70.43 72.50 61.63
21 70.52 72.08 59.18
  1. 1Regularization constant C was set to 1.