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Table 1 The standard scoring matrix of SARST

From: Protein structural similarity search by Ramachandran codes

 

A

B

C

D

E

T

K

V

N

F

G

H

I

L

M

Q

S

Y

R

P

W

Z

X

A

3

2

2

1

1

0

-2

-3

-3

-8

-11

-11

-13

-8

-8

-9

-14

-9

-7

-8

-7

-4

0

B

2

2

2

1

1

1

0

-1

-2

-6

-12

-10

-10

-7

-7

-6

-10

-8

-5

-6

-4

-6

0

C

2

2

2

1

1

3

-1

-2

-3

-6

-13

-11

-9

-7

-8

-7

-9

-10

-2

-7

-5

-3

0

D

1

1

1

3

1

2

2

-1

-1

-4

-9

-7

-8

-4

-6

-5

-7

-4

1

-3

-4

-2

0

E

1

1

1

1

3

1

2

3

1

-5

-7

-6

-7

-4

-4

-4

-7

-2

-1

-5

-3

-1

0

T

0

1

3

2

1

5

-1

2

-1

-2

-6

-6

-4

-4

-5

-2

-4

-4

2

-1

-1

3

0

K

-2

0

-1

2

2

-1

4

1

3

-3

-6

-6

-5

-3

-3

-2

-5

-2

-2

0

0

-1

0

V

-3

-1

-2

-1

3

2

1

9

3

-3

-4

-4

-2

-2

-2

0

0

3

2

-1

3

4

0

N

-3

-2

-3

-1

1

-1

3

3

5

-2

-4

-4

-3

-2

0

-2

-3

-2

-1

1

1

1

0

F

-8

-6

-6

-4

-5

-2

-3

-3

-2

5

-1

1

0

3

0

3

0

2

0

-2

-2

1

0

G

-11

-12

-13

-9

-7

-6

-6

-4

-4

-1

4

3

3

0

2

0

1

-3

-5

-5

-6

-2

0

H

-11

-10

-11

-7

-6

-6

-6

-4

-4

1

3

4

1

2

2

0

-1

-2

-4

-3

-5

-1

0

I

-13

-10

-9

-8

-7

-4

-5

-2

-3

0

3

1

4

0

1

2

4

0

-1

-4

-7

-2

0

L

-8

-7

-7

-4

-4

-4

-3

-2

-2

3

0

2

0

4

1

1

-1

0

0

-1

-2

1

0

M

-8

-7

-8

-6

-4

-5

-3

-2

0

0

2

2

1

1

4

0

1

-1

-4

-2

-2

1

0

Q

-9

-6

-7

-5

-4

-2

-2

0

-2

3

0

0

2

1

0

6

1

3

1

-3

-3

1

0

S

-14

-10

-9

-7

-7

-4

-5

0

-3

0

1

-1

4

-1

1

1

7

5

2

-3

-3

3

0

Y

-9

-8

-10

-4

-2

-4

-2

3

-2

2

-3

-2

0

0

-1

3

5

10

7

2

2

7

0

R

-7

-5

-2

1

-1

2

-2

2

-1

0

-5

-4

-1

0

-4

1

2

7

11

3

0

7

0

P

-8

-6

-7

-3

-5

-1

0

-1

1

-2

-5

-3

-4

-1

-2

-3

-3

2

3

8

7

4

0

W

-7

-4

-5

-4

-3

-1

0

3

1

-2

-6

-5

-7

-2

-2

-3

-3

2

0

7

9

5

0

Z

-4

-6

-3

-2

-1

3

-1

4

1

1

-2

-1

-2

1

1

1

3

7

7

4

5

6

0

X

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0