From: Protein structural similarity search by Ramachandran codes
Method | Average time per query (sec) | Average time per comparison (sec) | Relative to SARST |
---|---|---|---|
CE | 82789.20 | 2.43E+00 | 243497.65 |
FAST | 6241.57 | 1.83E-01 | 18357.56 |
TOPSCANa | 85.08 | 2.50E-03 | 250.24 |
YAKUSA | 35.6 | 1.05E-03 | 104.71 |
3D-BLAST | 9.07 | 2.66E-04 | 26.68 |
ProtDex2 | 0.76 | 2.23E-05 | 2.24 |
BLAST | 0.30 | 8.76E-06 | 0.88 |
SARST | 0.34 | 9.98E-06 | 1.00 |
SARST (2 CPUsb) | 0.16 | 4.70E-06 | 0.47 |