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Table 2 Speed comparisons for 108 queries on a database of 34055 proteins

From: Protein structural similarity search by Ramachandran codes

Method Average time per query (sec) Average time per comparison (sec) Relative to SARST
CE 82789.20 2.43E+00 243497.65
FAST 6241.57 1.83E-01 18357.56
TOPSCANa 85.08 2.50E-03 250.24
YAKUSA 35.6 1.05E-03 104.71
3D-BLAST 9.07 2.66E-04 26.68
ProtDex2 0.76 2.23E-05 2.24
BLAST 0.30 8.76E-06 0.88
SARST 0.34 9.98E-06 1.00
SARST (2 CPUsb) 0.16 4.70E-06 0.47
  1. aThese results were adapted from Aung and Tan's report [30].
  2. bTwo hyperthreading 3.2 GHz CPUs were used to obtain these results, others were calculated using one CPU.