Table 3 Average recall and precision with various E-values
From: Protein structural similarity search by Ramachandran codes
| Â | Family level | Â | Superfamily level | |||
|---|---|---|---|---|---|---|
E-value | Avg. recall (%) | Avg. precision (%) | Avg. fallout (10-4) | Avg. recall (%) | Avg. precision (%) | Avg. fallout (10-4) |
1.0E-40 | 30.37 | 99.83 | 0.01 | 20.75 | 100.00 | 0.00 |
1.0E-35 | 34.19 | 99.79 | 0.03 | 23.34 | 100.00 | 0.00 |
1.0E-30 | 38.75 | 99.69 | 0.09 | 26.49 | 100.00 | 0.00 |
1.0E-25 | 44.21 | 99.00 | 0.31 | 31.18 | 100.00 | 0.00 |
1.0E-20 | 49.85 | 98.28 | 0.60 | 35.80 | 99.94 | 0.05 |
1.0E-15 | 58.40 | 97.52 | 1.11 | 41.75 | 99.64 | 0.24 |
1.0E-13 | 61.40 | 97.10 | 1.95 | 44.14 | 99.33 | 0.78 |
1.0E-10 | 67.98 | 92.71 | 4.00 | 49.99 | 96.34 | 2.59 |
1.0E-07 | 74.13 | 83.61 | 14.71 | 56.26 | 83.80 | 15.88 |
1.0E-05 | 78.49 | 71.00 | 46.80 | 61.83 | 68.26 | 57.58 |
1.0E-03 | 83.04 | 60.37 | 141.24 | 68.83 | 49.16 | 193.98 |
1.0E-01 | 89.22 | 48.39 | 429.86 | 77.66 | 32.66 | 648.34 |
1 | 91.60 | 46.19 | 687.41 | 82.03 | 27.92 | 1127.10 |
10 | 94.12 | 43.60 | 1101.13 | 86.94 | 25.91 | 1911.62 |
100 | 95.98 | 40.92 | 1680.02 | 91.36 | 24.85 | 3004.44 |
1000 | 97.63 | 38.50 | 2335.32 | 95.20 | 23.83 | 4468.79 |