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Figure 8 | BMC Bioinformatics

Figure 8

From: Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms

Figure 8

Results from the docking simulations performed for 542 complexes from the PDB2005 dataset, using three different sets of chemical matching rules. Panels A, B and C show the distribution of RMSD values of the best found solution using the native DOCK, R1 and R2 sets of matching rules, respectively. Panels D, E and F show the distribution of the total number of orientations (N0) explored in the simulations, for the same sets of matching rules.

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