Table 1 The difference in average BPP values and G+C content in 6th – 30th CDS positions of human and mouse cDNAs characterized by optimal and suboptimal start codon contexts (purine (Pu) and pyrimidine (Py) in pos. -3 upstream AUG, respectively)†
CDS pos. | human | mouse | ||
|---|---|---|---|---|
BPPPy-BPPPu | GCPy-GCPu,% | BPPPy-BPPPu | GCPy-GCPu,% | |
6 | -0.014 | -3.93 | 0.007 | -1.16 |
7 | 0.005 | -2.23 | -0.016 | -3.14 |
8 | 0.011 | 1.34 | -0.002 | 0 |
9 | 0.006 | -2.36 | -0.006 | -1.07 |
10 | 0.006 | 1.15 | -0.014 | -1.21 |
11 | -0.008 | 2.14 | -0.004 | -1.47 |
12 | -0.007 | -3.79 | 0.005 | 2.46 |
13 | 0.015* | -0.41 | -0.004 | -0.38 |
14 | 0.012** | 1.65 | 0.020* | 4.47 |
15 | 0.015*** | -1.99 | 0.018** | -1.08 |
16 | 0.014* | -0.93 | 0.036*** | -1.48 |
17 | 0.012* | 4.21 | 0.019* | 7.53 |
18 | -0.003 | -3.23 | -0.005 | -5.46 |
19 | 0.004 | 0.59 | 0.010 | 1.31 |
20 | 0.005 | 0.68 | -0.008 | 2.8 |
21 | -0.025 | -4.94 | -0.012 | -1.29 |
22 | -0.005 | -0.50 | -0.013 | -1.6 |
23 | -0.018 | 3.79 | -0.020 | 5.15 |
24 | -0.020 | -3.51 | 0.001 | -3.21 |
25 | 0.007 | -0.70 | -0.013 | -0.32 |
26 | 0.017* | 2.14 | -0.003 | 4.01 |
27 | 0.006 | -3.66 | -0.022 | -4.23 |
28 | -0.001 | -0.03 | -0.022 | 1.02 |
29 | 0.007 | 5.30 | -0.022 | 5.21 |
30 | -0.016 | -3.68 | -0.035 | -5.06 |