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Table 1 Initial clusters for each ligand

From: Automatic generation of 3D motifs for classification of protein binding sites

Ligand

Proteins in PDB50

Valid clusters

Core cluster sizes

AMP

75

3

5-4-3

ADP

185

9

10-9-8-7-6-5-5-4-4

ATP

133

6

10-9-4-3-3-3