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Table 5 Example with Q88869_MIDDV

From: Gene analogue finder: a GRID solution for finding functionally analogous gene products

Rating Symbol UniProt χ2 Common terms Pfam Organism Local alignment
  Hit length Identity %
1 Q88869_MIDDV Q88869 20080,7 54 No Middelburg virus 37 100.0
2 O75901 O75901 19332,8 54 RA, RasGTP effectors Homo sapiens 28 25.0
3 Pamci O88869 17455,7 54 RA, RasGTP effectors Rattus norvegicus 6 66.7
4 Tb09.244.2760 Q38CZ1 12733,8 44 -, Golgi dynamics Trypanosoma brucei 36 27.8
5 Tb11.01.6880 Q381R2 12733,8 44 GP25L, Golgi dynamics Trypanosoma brucei 44 22.7
6 TOM1_HUMAN O60784 11529,8 35 VHS; membrane targeting Homo sapiens 42 23.8
7 Vps28 Q9D1C8 11486,0 32 VPS28, Vacuolar protein sorting Mus musculus 40 32.5
8 AT1G28490.1 Q946Y7 11360,8 32 SNARE, vesicular fusion Arabidopsis thaliana 33 21.2
9 AT1G28490.2   11360,8 32 SNARE, vesicular fusion Arabidopsisthaliana 21 23.8
10 AT5G16830 Q39233 11011,1 35 SNARE, vesicular fusion Arabidopsis thaliana 27 29.6
11 AT5G46860.1 P93654 11011,1 35 SNARE, vesicular fusion Arabidopsis thaliana 30 30.0
12 CG9308 Q9W2A6 11007,0 36 GP25L, Golgi dynamics Drosophila melanogaster 14 28.6
13 AT5G26980.1 O65359 10926,6 34 SNARE, vesicular fusion Arabidopsis thaliana 24 29.2
14 AT4G02195.1 Q9SWH4 10926,6 34 SNARE, vesicular fusion Arabidopsis thaliana 24 33.3
15 AT5G26980.2   10926,6 34 SNARE, vesicular fusion Arabidopsis thaliana 24 29.2
16 SPBC4F6.05c O42707 10881,4 35 Lectin_leg-like Schizosaccharomyces pombe 31 25.8
17 COPB_HUMAN P53618 10873,7 39 No Homo sapiens 23 30.4
18 VPS27 P40343 10803,4 33 VHS; membrane targeting Saccharomyces cerevisiae 32 31.2
19 tlg1 Q9HGN3 10758,7 32 SNARE, vesicular fusion Schizosaccharomyces pombe 38 18.4
20 ENT5 Q03769 10505,4 38 ENTH, membrane interacting Saccharomyces cerevisiae 27 14.8
21 sft2 Q9P6K1 10398,2 33 SFT2, vesicular transport Schizosaccharomyces pombe 11 36.4
22 Cope O89079 10365,0 32 Coatomer_E, Golgi to ER transport Mus musculus 29 27.6
23 Copb1 P23514 10363,2 37 Adaptin_N; coated vesicles Rattus norvegicus 23 30.4
24 Tgoln2 Q4G0B6 10255,5 34 No Rattus norvegicus 14 28.6
25 Vps26 P40336 10182,5 29 Vps26, Vacuolar protein sorting Mus musculus 7 57.1
26 SPAC630.11 Q9UUH1 10182,0 30 Vps55, Vacuolar protein sorting Schizosaccharomyces pombe 9 44.4
27 apl4 Q9UU81 10141,8 37 Adaptin_N; coated vesicles Schizosaccharomyces pombe 17 35.3
28 apm1 Q9HFE5 10141,8 37 -, Clathrin coated vesicles Schizosaccharomyces pombe 24 25
29 apl2 O43079 10141,8 37 Adaptin_N; coated vesicles Schizosaccharomyces pombe 16 37.5
30 Q6DE70_XENLA Q6DE70 10135,7 33 C2, Ca2+-dependent membrane-targeting Xenopus laevis 8 50.0
  1. The table contains the following information: The ranking of the potential functional analogues of Q88869_MIDDV according the χ2 - value, the gene name and the UniProt accession number, the χ2 - value, the number of common terms between a hit and Q88869_MIDDV, the Pfam name with short domain description the gene product belongs to, the organism the gene products is from, and the local alignment characteristics, such as hit length and the % identity of the hit, of the alignment between Q88869_MIDDV and the hit sequence.
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