Figure 6From: Considerations in the identification of functional RNA structural elements in genomic alignmentsRelationship between scores of real and shuffled genomic windows. Each scatter plot shows scores for 28,275 real tiling windows from Chromosome 19 in which more than 50% of all nucleotides were replaced in dinucleotide shuffling by shuffle-pair.pl (the same 28,275 as in the middle column of Figure 4b). In all cases the horizontal axis is real sequence, vertical axis is shuffled. left, shuffling using shuffle-pair.pl; right, using shuffle-aln.pl.Back to article page