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Table 2 Efficiency results

From: How to decide which are the most pertinent overly-represented features during gene set enrichment analysis

 

Cellular Components

Molecular Functions

Biological Processes

Combined

all comparisons

327, 096

802, 872

1, 007, 838

2, 137, 806

common elements comp.

19, 821

22, 556

48, 084

90, 461

pertinent target sets comp.

6, 769

8, 884

11, 440

27, 093

ratio pertinent/all

2.07%

1.11%

1.13%

1.26%

ratio pertinent/common

34%

39%

23%

29%

  1. Summary of the results obtained for the 3 Gene Ontology branches extracted neighborhoods in terms of efficiency that is, the number of sets comparisons performed.
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BMC Bioinformatics

ISSN: 1471-2105

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