Figure 9
From: A replica exchange Monte Carlo algorithm for protein folding in the HP model
Effect of maximum temperature on run-time. Results for mean runtimes of 100 independent runs is shown for an increasing value of the maximum temperature. In the 2D case of folding S1-7 (left side), extremely low and extremely high temperatures yield the worst running times. The mean run-time seems to consistently scale worse as the maximum temperature is increased in the 3D case, while folding S2-7.