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Table 1 Standard benchmark sequences

From: A replica exchange Monte Carlo algorithm for protein folding in the HP model

ID Length E* Protein Sequence
2D HP
S1-1 20 -9 (HP)2PH2PHP2HPH2P2HPH
S1-2 24 -9 H2(P2H)7H
S1-3 25 -8 P2HP2(H2P4)3H2
S1-4 36 -14 P3H2P2H2P5H7P2H2P4H2P2HP2
S1-5 48 -23 P2H(P2H2)2P5H10P6(H2P2)2HP2H5
S1-6 50 -21 H2(PH)3PH4PH(P3H)2P4H(P3H)2PH4(PH)4H
S1-7 60 -36 P2H3PH8P3H10PHP3H12P4H6PH2PHP
S1-8 64 -42 H12(PH)2(P2H2)2P2HP2H2PPH2P2HP2(H2P2)2(HP)2H12
S1-9 85 -53 H4P4H12P6(H12P3)3HP2(H2P2)2HPH
S1-10 100 -50 P3H2P2H4P2H3(PH2)2PH4P8H6P2H6P9HPH2PH11P2H3PH2PHP2HPH3P6H3
S1-11 100 -48 P6HPH2P5H3PH5PH2P4H2P2H2PH5PH10PH2PH7P11H7P2HPH3P6HPH2
3D HP
S2-1 48 -32 HPH2P2H4PH3P2H2P2HPH3PHPH2P2H2P3HP8H2
S2-2 48 -34 H4PH2PH5P2HP2H2P2HP6HP2HP3HP2H2P2H3PH
S2-3 48 -34 PHPH2PH6P2HPHP2HPH2(PH)2P3H(P2H2)2P2HPHP2HP
S2-4 48 -33 PHPH2P2HPH3P2H2PH2P3H5P2HPH2(PH)2P4HP2(HP)2
S2-5 48 -32 P2HP3HPH4P2H4PH2PH3P2(HP)2HP2HP6H2PH2PH
S2-6 48 -32 H3P3H2PH(PH2)3PHP7HPHP2HP3HP2H6PH
S2-7 48 -32 PHP4HPH3PHPH4PH2PH2P3HPHP3H3(P2H2)2P3H
S2-8 48 -31 PH2PH3PH4P2H3P6HPH2P2H2PHP3H2(PH)2PH2P3
S2-9 48 -34 (PH)2P4(HP)2HP2HPH6P2H3PHP2HPH2P2HPH3P4H
S2-10 48 -33 PH2P6H2P3H3PHP2HPH2(P2H)2P2H2P2H7P2H2
  1. 2D and 3D standard benchmark collection which can be found in [9]. These sequences can be found originally amongst [6, 20]. As presented in [9], H i and P i indicate a string of i consecutive H's and P's; likewise (s) i indicated an i-fold repetition of string s.