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Table 3 Results on 3D benchmark sequences

From: A replica exchange Monte Carlo algorithm for protein folding in the HP model

ID E* PERM t e x p MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqqGqbaucqqGfbqrcqqGsbGucqqGnbqtdaWgaaWcbaGaemiDaq3aaSbaaWqaaiabdwgaLjabdIha4jabdchaWbqabaaaleqaaaaa@373A@ ACO-HPPFP-3 REMC vshd REMC pm REMC m
S2-1 -32 -32 (0.1 min) -32 (30 min) -32 (0.75 min) -32 (0.1 min) -32 (0.1 min)
S2-2 -34 -34 (0.3 min) -34 (420 min) -34 (8.1 min) -34 (0.2 min) -34 (0.2 min)
S2-3 -34 -34 (0.1 min) -34 (120 min) -34 (3.3 min) -34 (0.1 min) -34 (0.1 min)
S2-4 -33 -33 (2 min) -33 (300 min) -33 (2.2 min) -33 (0.2 min) -33 (0.1 min)
S2-5 -32 -32 (0.5 min) -32 (15 min) -32 (1.2 min) -32 (0.1 min) -32 (0.1 min)
S2-6 -32 -32 (0.1 min) -32 (720 min) -32 (1.5 min) -32 (0.1 min) -32 (0.1 min)
S2-7 -32 -32 (0.5 min) -32 (720 min) -32 (3.9 min) -32 (0.4 min) -32 (0.3 min)
S2-8 -31 -31 (0.3 min) -31 (120 min) -31 (2.3 min) -31 (0.2 min) -31 (0.1 min)
S2-9 -34 -34 (5 min) -34 (450 min) -34 (14 min) -34 (0.7 min) -34 (0.9 min)
S2-10 -33 -33 (0.01 min) -33 (60 min) -33 (2 min) -33 (0.1 min) -33 (0.1 min)
  1. Details on runs can be found in the text. Results for PERM and ACO-HPPFP-3 have been reproduced from [9]. All variants of REMC outperform ACO-HPPFP-3. REMC m and REMC pm match or outperform PERM in 9 of 10 instances. Details of the experimental protocol can be found in the text.