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Table 1 Global measures of the Spearman's rank correlation coefficients (ρ)

From: Benchmarking consensus model quality assessment for protein fold recognition

 

TM-score

MaxSub

GDT

Combined

3D-Jury

0.955

0.924

0.925

0.943

LEE*

0.943

0.903

0.909

0.926

ModFOLD

0.843

0.807

0.807

0.825

PROQ*

0.828

0.764

0.759

0.789

Pcons*

0.803

0.773

0.765

0.786

ProQ-MX

0.779

0.755

0.751

0.768

ModSSEA

0.744

0.736

0.742

0.747

MODCHECK

0.729

0.659

0.658

0.686

ProQ-LG

0.688

0.651

0.640

0.665

  1. All models are pooled together and the ρ is measured between predicted and observed model quality scores. The combined observed model quality score was also calculated for each individual model e.g. mean score for each model (TM-score+MaxSub+GTD)/3.*The MQAP scores for these methods were downloaded from CASP7 website; all other MQAP methods were run in house during the CASP7 experiment. †MQAP methods which rely on the comparison of multiple models or include additional information from multiple servers; all other methods are capable of producing a single score based on a single model.