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Table 2 Target-by-target measures of the Spearman's rank correlation coefficients (ρ)

From: Benchmarking consensus model quality assessment for protein fold recognition

  TM-score MaxSub GDT Combined
3D-Jury 0.870 0.818 0.857 0.862
LEE* 0.793 0.734 0.771 0.779
Pcons* 0.732 0.752 0.754 0.754
MODCHECK 0.574 0.568 0.587 0.584
PROQ* 0.557 0.575 0.580 0.576
ModFOLD 0.550 0.546 0.556 0.550
ModSSEA 0.506 0.501 0.520 0.516
ProQ-MX 0.412 0.444 0.444 0.438
ProQ-LG 0.289 0.340 0.326 0.320
  1. Target-by-target measure – ρ is measured using the models for each target separately and the overall mean score is calculated. The combined observed model quality score was also calculated for each individual model e.g. mean score for each model (TM-score+MaxSub+GTD)/3. *The MQAP scores for these methods were downloaded from CASP7 website; all other MQAP methods were run in house during the CASP7 experiment. †MQAP methods which rely on the comparison of multiple models or include additional information from multiple servers; all other methods are capable of producing a single score based on a single model.