|
Mouse mRNA to Human genome
|
|---|
| |
CDS+UTR (nucl. level)
|
CDS alone (nucl. level)
|
CDS alone (exon level)
|
Speed (mRNA/hr)
|
|
Algorithm
|
Sn
|
Sp
|
Sn
|
Sp
|
Sn
|
Sp
| |
|
CAT
|
0.765
|
0.961
|
0.924
|
0.968
|
0.855
|
0.893
|
3579
|
|
est2genome
|
0.772
|
0.963
|
0.926
|
0.970
|
0.856
|
0.895
|
17
|
|
GeneWise
|
n/a
|
n/a
|
0.927
|
0.972
|
0.869
|
0.917
|
8
|
|
Exonerate
|
0.385
|
0.983
|
0.589
|
0.977
|
0.495
|
0.791
|
1254
|
|
exonerate-aa
|
n/a
|
n/a
|
0.856
|
0.977
|
0.787
|
0.890
|
10027
|
|
BLAT
|
0.487
|
0.976
|
0.678
|
0.973
|
0.161
|
0.172
|
5138
|
|
BLAT-dnax
|
0.615
|
0.979
|
0.872
|
0.975
|
0.513
|
0.518
|
1172
|
|
sim4
|
0.535
|
0.977
|
0.743
|
0.976
|
0.524
|
0.569
|
36815
|
|
Zebrafish mRNA to Human genome
|
| |
CDS+UTR (nucl. level)
|
CDS alone (nucl. level)
|
CDS alone (exon level)
|
Speed (mRNA/hr)
|
|
Algorithm
|
Sn
|
Sp
|
Sn
|
Sp
|
Sn
|
Sp
| |
|
CAT
|
0.489
|
0.963
|
0.803
|
0.957
|
0.645
|
0.754
|
2806
|
|
est2genome
|
0.463
|
0.968
|
0.764
|
0.961
|
0.590
|
0.750
|
41
|
|
GeneWise
|
n/a
|
n/a
|
0.862
|
0.975
|
0.781
|
0.879
|
12
|
|
exonerate-aa
|
n/a
|
n/a
|
0.652
|
0.975
|
0.543
|
0.772
|
6757
|
- The ''correct'' answers, against which we judge these algorithms, are based on an alignment of human mRNAs from RefSeq to the sequence of the human genome, as annotated in the UCSC browser.
