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Table 1 The comparison of designed oligonucleotides from different programs

From: Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy

Programs* E. coli K12 (4237 cds) S. cerevisiae (6680 cds) P. falciparum (5363 cds)
  #designeda #accepted b #designed #accepted #designed #accepted
OligoRankPick 4232 ξ 4047(95.6) & 6679 ζ 6096(91.3) 5363 5092(94.9)
ArrayOligoSelector 4201 3371(80.2) 6221 3471(55.8) 5339 2093(39.2)
OligoPicker 4142 2594(62.6) 6208 3614(58.2) 4235 3543(83.7)
OligoAarray 2.1 3221 2826(87.7) 6587 4440(67.4) 5206 2317(44.5)
  1. *ArrayOligoSelector 3.8.4; OligoPicker; OligoArray 2.1. a: oligonucleotide number selected by the program; b: good oligonucleotide number based on BLAST score of non-target (<= 40% continuous identity) and GC content (± 5%). & Percentage of good quality oligonucleotide to total selected oligonucleotide (in the bracket). ξ Five rejected coding sequences are less than 70 bp. ζ Only one rejected sequence is YJR151W-A (51 bp).