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Table 3 P. falciparum microarray data and their comparisons to existing transcriptomes

From: Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy

Transcriptome results

Trophozoite

Schizont

3-fold in at least two replicates

862

431

Present in the LOM-IDC transcriptome

630/73%

320/74.2%

*Same stage classification in LOM-IDC Transcriptome

595/94.5%

307/95.9%

Present in the HDSO-Affymetrix transcriptome

741/86%

353/82%

**Same stage classification in HDSO-Affymetrix transcriptome

676/91.2%

336/95.2%

  1. *genes with peak expression before and after 30 hours post invasion are classified as trophozoite and schizont specific, respectively
  2. ** genes with higher expression levels in late ring and early and late trophozoites compared to early and late schizonts are classified as trophozoite specific and vice versa
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BMC Bioinformatics

ISSN: 1471-2105

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