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Figure 7 | BMC Bioinformatics

Figure 7

From: SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences

Figure 7

Performance comparison of different programs for 50% and 25% minimum overlap. Above, for each TF pattern, we indicate its correct sizes; and the rank, length (Len), average site scores for a minimum overlap of 50% (S75%), and ratio rank/S50% (R/S) for respectively Meme (anr and zoops) and Searchpattool. Below, for each TF pattern, we indicate its correct sizes; and the rank, length (Len), average site scores for a minimum overlap of 25% (S25%), and ratio rank/S25% (R/S) for respectively Meme (anr and zoops) and Searchpattool. Yellow and green background colours indicate respectively the best performance score and the best ratio. *Na = not available

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