Skip to main content

Table 4 Test1 setting parameters

From: SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences

  Meme Consensus Motif sampler Mitra Searchpattool
Run times 2 2 20 5 1
Number of site per sequence zoops
anr
0-n
1-n
Max n sites no no
Minimum number of occurrences no no no 2–3 no
Minimum support no no no no 60%
Number of mismatches no no no 0–4 no
Pattern length input L* L L L Max L
Number of outputs 40 40 10 (x 20)
Limited to 40
Best 40 patterns Limited to 40 best zs-sup Ordered by p-value + and support -
Pattern length output L L L L 2 to L Limited to L
  1. * L = exact known pattern length
\