Correlation between CDD-based and DaliLite-based f
(0)s. The 3581 pairs of reference alignments from the root node set were considered, excluding those from the five outlier superfamilies (Figure 11) and additional 10 pairs for which DaliLite didn't produce sequence alignment at all. The x- and y-axes give fcar(0) values averaged over the six methods, excluding DaliLite, with CDD and DaliLite alignments as references, respectively. The pairs from the three superfamilies, cd01984, cd00531 and cd00096, are colored red, cyan and grey, respectively. The remainder are colored black. Filled circles indicate the pairs visually examined, whose alignments are shown in Figures 5 and 16.