Figure 5
From: GEVALT: An integrated software tool for genotype analysis
LD plots comparison. Top – An LD plot calculated using the phased genotypes (default). Bottom – An LD plot calculated using the unphased genotypes. Different LD scores are observed in many SNP pairs. These differences result from unambiguous phasing of double heterozygotes and from completed missing data. Markers that were chosen as tag SNPs in the Stampa tab are highlighted in blue.