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Figure 3 | BMC Bioinformatics

Figure 3

From: Linking microarray reporters with protein functions

Figure 3

Improving Agilent annotation. The Agilent G2519A Option 2 Mouse Development 44K array consists of 41,013 reporters. (A) The annotation file contains informative descriptions for 18,609 reporters (45.4%), represented in the first column. All other reporters are non-informative, regarded as "badly annotated". (B) The next three columns represent the number of UniProt annotations (SP) obtained from BLASTing against the cEMBL subset(s): Mouse: 14,938 (36.4%); Mouse + Rat: 15,416 (37.3%); Mouse + Rat + Human: 15,838 (38.6%). (C) Columns 5, 6 and 7 show the new annotations derived from BLASTs against both cEMBL and EnsEMBL (M: total = 26,554 (64.7%) of which 16,622 (40.5%) UniProt IDs; MR: total = 26,903 (65.6%) of which 16,908 (41.2%) UniProt IDs; MRH: total = 27,077 (66.0%) of which 17,365 (42.3%) UniProt IDs).

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