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Table 5 Used databases

From: Linking microarray reporters with protein functions

Name

Version

File(s) used

Download Location

EMBL

88.00

Rel_std_mus01.dat

...

Rel_std_mus05.dat

ftp://ftp.ebi.ac.uk/pub/databases/embl/release/

UniProt

51.00

uniprot_sprot.dat

reldate.txt

ftp://ftp.expasy.org/databases/uniprot/current_release/

EnsEMBL

41.00

Mus_Musculus....cdna.all.fa

Rattus_Norvegicus....cdna.all.fa

Homo_Sapiens....cdna.all.fa

ftp://ftp.EnsEMBL.org/pub/release-41/

RefSeq

20.00

mouse.rna.fna.gz

ftp://ftp.ncbi.nih.gov/RefSeq/M_musculus/mRNA_Prot/