|
Family
|
Num. of seed seq. in Rfam
|
Num. of datasets of ten
|
Avg. sequence identity
|
Avg. length and STD
|
MCC
|
|---|
| | | | | |
RNA- subopt's first choice
|
RNA- spa
|
Stem- Loc
|
pmMulti
|
Fold-AlignM
|
RNAcast
|
|
tRNA
|
1114
|
5
|
43%
|
71 ± 4
|
0.64
|
0.86
|
0.61
|
0.73
|
0.95
|
0.45 (3)
|
|
Tymo
|
28
|
2
|
68%
|
79 ± 3
|
0.76
|
0.93
|
0.98
|
0.72
|
0.94
|
0.92 (1)
|
|
SAM
|
71
|
5
|
62%
|
111 ± 15
|
0.59
|
0.66
|
0.38
|
0.64
|
0.53
|
0.62 (1)
|
|
Lysine
|
60
|
5
|
50%
|
179 ± 7
|
0.63
|
0.68
|
0.28
|
0.64
|
0.52 (1)
|
0.71 (1)
|
|
Purine
|
37
|
3
|
56%
|
96 ± 1
|
0.68
|
0.86
|
0.51
|
0.74
|
0.78
|
0.72 (1)
|
|
Cobalamin
|
171
|
5
|
46%
|
200 ± 27
|
0.38
|
0.40
|
0.12
|
no data
|
no data
|
0.41
|
|
FMN
|
48
|
4
|
60%
|
135 ± 19
|
0.32
|
0.44
|
0.25
|
0.45
|
0.64
|
0.47 (1)
|
|
glmS
|
14
|
1
|
51%
|
159 ± 40
|
0.58
|
0.61
|
0.38
|
no data
|
no data
|
no data
|
- Each family was represented by several non-overlapping datasets (see third column). The MCC score is averaged among the datasets of each family. The number of datasets in which the program failed to produce an output appears in brackets. "no data" denotes that the program failed on all datasets. In some cases, StemLoc returns a consensus structure for only part of a dataset. Therefore, the MCC score reported here only reflects those sequences for which a structure was predicted. See [Additional File 5] for raw data.
