Skip to main content
Figure 1 | BMC Bioinformatics

Figure 1

From: Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data

Figure 1

Overview of the data analysis process. A) Methods appear in blue, and data in yellow. B) The reference sets used for each analysis method are as follows. '2': within each MR trio (child, mother and father), three comparisons were done – child to father as reference, child to mother as reference, and father to mother as reference. '50': each sample was compared to a reference set of 50 unaffected mothers of children with MR. These 50 mothers selected for this reference set had the lowest numbers of CNVs detected by dChip compared to other mothers. '214': each sample was compared to a reference set that included all 214 unaffected parents (107 mothers and 107 fathers) of the children with MR. '106': a default reference set of 106 individuals provided by Affymetrix for copy number analysis with CNAT [18].

Back to article page