Table 1 List of copy number analysis software packages evaluated
Developed for Affymetrix GeneChip Mapping 100 K Array Data Analysis | |||||
|---|---|---|---|---|---|
Software | Name | Normalization, scaling and feature extraction a | Smoothing | Estimation | Reference |
CNAG 1.1 | Copy Number Analyser for GeneChip | yes | yes | yes | [22] |
dChip (Nov 17, 2005) | DNA-Chip Analyzer | yes | yes | yes | [23] |
CNAT 3.0 | Chromosome Copy Number Analysis Tool | yes | yes | no | [14] |
Developed for Array CGH Data Analysis | |||||
Software | Name | Normalization, scaling and feature extraction | Smoothing | Estimation | Reference |
GLAD (R) | Gain and Loss Analysis of DNA | no | yes | yes | [26] |