Table 4 Detection of validated CNVs
Sample ID | CNV | Chr | Length (kb) | CNAG Ref2a | CNAG Ref50 | CNAG-GLAD Ref2 | CNAG-GLAD Ref50 | dChip Ref50 | dChip Ref214 | dChip-GLAD Ref50 | dChip-GLAD Ref214 | CNAT-GLAD Ref50 | CNAT-GLAD Ref106 | CNAT-GLAD Ref214 | # Methods detected | % Methods detected |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3476c | delb | 4 | 10,655 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
1895c | del | 13 | 4,887 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
4818c | del | 12 | 3,204 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
9143c | del | 11 | 3,175 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
8326c | del | 14 | 1,923 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
6235c | del | 10 | 1,737 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 9 | 82 |
6545c | del | 7 | 785 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 10 | 91 |
7807c | del | 22 | 731 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
4357c | del | 6 | 595 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
4357m | del | 6 | 595 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
4357c | del | 6 | 353 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
4357m | del | 6 | 353 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
5003c | del | 2 | 294 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 9 | 82 |
7551c | del | 2 | 220 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
7551m | del | 2 | 220 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 10 | 91 |
1280c | del | 4 | 192 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 9 | 82 |
1280m | del | 4 | 192 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 9 | 82 |
0674c | del | 2 | 147 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 9 | 82 |
0674f | del | 2 | 147 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 8 | 73 |
5566c | del | 14 | 130 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 4 | 36 |
6789c | del | 14 | 68 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 5 | 45 |
6789m | del | 14 | 68 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 36 |
3476c | del | 1 | 66 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 8 | 73 |
3476m | del | 1 | 66 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 6 | 55 |
6607c | del | 20 | 57 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 9 |
6607m | del | 20 | 57 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 9 |
8785c | del | 18 | 43 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 7 | 64 |
8785f | del | 18 | 43 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 3 | 27 |
9299f | del | 9 | 38 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 6 | 55 |
9299c | del | 9 | 38 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 5 | 45 |
8379c | dup | 10 | 23,842 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11 | 100 |
4794c | dup | 16 | 3,356 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 5 | 45 |
8379c | dup | 15 | 1,481 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 10 | 91 |
3595c | dup | 15 | 781 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 7 | 64 |
3595m | dup | 15 | 781 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 18 |
3923c | dup | 11 | 494 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 7 | 64 |
3923m | dup | 11 | 494 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 18 |
6168c | dup | 17 | 324 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 4 | 36 |
Number of validated CNVs detected | 29 | 24 | 33 | 28 | 27 | 21 | 26 | 26 | 29 | 17 | 32 | |||||
% of validated CNVs detected | 76 | 63 | 87 | 74 | 71 | 55 | 68 | 68 | 76 | 45 | 84 | |||||