Table 3 Input partial sequences of norovirus capsids and corresponding database matches
Input target partial capsid sequences of norovirus capsids -A- | ||||||
|---|---|---|---|---|---|---|
>1UK1| [NCBI:DQ665819] | ||||||
MKMAS SDANPS DGSTANLVPEVNNEVMALEPV VGAAIAAP VA GQQNVIDPWIRNNFVQA P | ||||||
G GEFTV SPRNAPGEILWSAP LGPDL NPYLSHLAR | ||||||
>2JP1| [NCBI:AB264170] | ||||||
S ADG ATGAGQ LVPEVN TADPIPIDPV AGSSTALA TAGQVNLIDPWIINNFVQAPQGEFTI | ||||||
SPNNTPGDV | ||||||
>3JP2| [NCBI:AB264158] | ||||||
GASGAGQ LVPEVN ASDPLAMDPV AGSSTAVA TAGQVNPIDPWIINNFVQAPQGEFTI SPNNTPGDV | ||||||
>4JP3| [NCBI:AB264152] | ||||||
GTSGAGQ LVPEAN TAEPISMDPV AGAATAVA TAGQINMIDPWIMSNFVQAPQGEFTV SPNNTPGDV | ||||||
>5TP1| [NCBI:DQ263739] | ||||||
DG AAGLVPEINNEAMALDPV AGAAIAAP LT GQQNIIDPWIMNNFVQA PG GEFTV SPRNSP | ||||||
GEVLLNLE LGPEI | ||||||
>6ST1| [NCBI: AB058547] | ||||||
MMMAS KDAPTNMDGTSGAGQ LVPEAN TAEPISMDPV AGAATAVA TAGQINMIDPWIMSNF | ||||||
VQAPQGEFTV SPNNTPGDVLFDLQLGPQLNPFLAHASQ | ||||||
>6ST5|[Simulated sequence by mutating sequence 6ST1 in locations 11, 30 & 40 highlighted in green) | ||||||
MMMASKDAPTSMDGTSGAGQLVPEANTAEQISMDPVAGASTAVATAGQINMIDPWIMSNF | ||||||
VQAPQGEFTVSPNNTPGDVLFDLQLGPQLNPFLAHASQ | ||||||
-B- | ||||||
Partial sequence | Partition-wise maximally matching characteristic residues (Corresponding sequence group) | |||||
| Â | P2 | P3 | P4 | P5 | P6 | P7 |
1UK1 | 70V (GII) | 4A, 5S, 36V, 44P (GII) | Â | Â | ** | 11S, 46A, 63A, 65G, 82S, 83A, 84P, 89L (GIIa1) |
2JP1 | 20Q, 70I (GI) | 26N, 36V, 44A (GIa) | -- | -- | 11S, 13D, 14G (GIa1) | ** |
3JP2 | 20Q, 70I (GI) | 26N, 36V, 44A (GIa) | -- | -- | ** | ## |
4JP3 | ** | 26N, 36V, 44A (GIa) | -- | -- | ** | ## |
5TP1 | 70V (GII) | 36V, 44P (GII) | Â | Â | ## | 13D, 14G, 46T, 63A, 65G, 82N, 83L, 84E, 89I (GIIa3_2) |
6ST1 | 20Q, 70V (##) | 4A, 5S, 26N, 36V, 44A (GIa) | -- | -- | 11N 13D 14G 82D 83L (GIa2) | 46A 63A 65Q 84Q 89L (GIa2_1) |
6ST5 | 20Q, 70V (##) (Synthetic sequence) | 4A, 5S, 26N, 36V, 44A (GIa) | -- | -- | 11S 13D 14G 82D 83L (GIa1) | 46A 63A 65Q 84Q 89L (GIa1_2 or GIa1_4) |