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Figure 7 | BMC Bioinformatics

Figure 7

From: XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

Figure 7

Seed Extension Example. Extension of the seed pair 'KYR' is illustrated using the input sequence S = PQKYRSACYKYRACYFG (|S| = 19) with parameter values L = 3 and g = 1. A tracing of this SE example is shown for the sequence iterator values (x, y) and the compared subwords in S. The SE subroutine used in each step is indicated in parentheses, where M = hashcode array and CW = consensus wobble.

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BMC Bioinformatics

ISSN: 1471-2105

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