Table 2 Sets of orthologous genes used to discover protein motifs
From: Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Thermophiles | Mesophiles | ||
|---|---|---|---|
organism | gene | organism | gene |
Archaeoglobus fulgidus | AF0373 | Saccharomyces cerevisiae | YER148w |
Aeropyrum pernix | APE1862 | Halobacterium sp. NRC-1 | VNG2243G |
Methanococcus jannaschii | MJ0507 | Halobacterium sp. NRC-1 | VNG7031 |
Methanobacterium thermoautotrophicum | MTH1627 | Halobacterium sp. NRC-1 | VNG7038 |
Pyrococcus abyssi | PAB1726 | Halobacterium sp. NRC-1 | VNG7100 |
Pyrococcus horikoshii | PH1009 | Halobacterium sp. NRC-1 | VNG7114 |
Thermoplasma volcanium | TVN1394 | Halobacterium sp. NRC-1 | VNG7171 |
Thermoplasma acidophilum | Ta0199 | Halobacterium sp. NRC-1 | VNG6037G |
| Â | Â | Halobacterium sp. NRC-1 | VNG6050G |
| Â | Â | Halobacterium sp. NRC-1 | VNG6140G |
| Â | Â | Halobacterium sp. NRC-1 | VNG6438G |
| Â | Â | Halobacterium sp. NRC-1 | VNG6476G |