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Table 1 Differential genes in complete dataset and among E-genes: The first column shows the number of all genes with Benjamini-Hochberg false discovery rate [8] ≤ 10%; the second column the number of all genes with at least 1.5-fold disregulation; the third column the number of all genes with f1-density > 1 (effected genes). The last two columns show statistics among the selected E-genes (see Methods Section): the number of E-genes with false discovery rate ≤ 10% and with f1-density > 1

From: Large scale statistical inference of signaling pathways from RNAi and microarray data

Gene

fdr ≤ 10%

≥ 1.5-fold disreg.

f1 > 1

fdr ≤ 10%(E-genes)

f1 > 1(E-genes)

AKT1

3

5

511

3

26

AKT2

2276

33

2278

63

63

BCL2

18

6

525

4

29

CCNG2

2904

10

2904

59

59

DDR1

0

2

217

0

23

ESR1

357

45

746

59

64

FOXA1

53

17

530

24

35

GDF15

3

2

298

3

26

GPR30

2

20

191

2

14

HSPB8

0

1

284

0

4

LOC120224

1141

3

1516

24

27

STC2

1447

18

1609

14

15

XPB1

3

4

642

3

46