Skip to main content

Table 2 Evaluation of the WGCEP model. The best F-measures for each dataset and each similarity function. ASTRAL95_1_161 and ASTRAL95_2_161 are as in Table 1. ASTRAL95_1_171 and ASTRAL95_2_171 refer to the updated ASTRAL95 data of SCOP v1.71. BeH or SoH denote the similarity function, while the coverage factor f represents the influence of the coverage to the similarity.

From: Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing

Dataset Similarity Factor f Threshold F-measure
ASTRAL95_1_171 SoH 18 -3.0 0.91
ASTRAL95_1_171 BeH 15 -3.4 0.90
ASTRAL95_2_161 SoH 19 -1.6 0.89
ASTRAL95_2_171 SoH 15 -3.2 0.88
ASTRAL95_2_161 BeH 14 -2.4 0.87
ASTRAL95_2_171 BeH 13 -2.6 0.85
ASTRAL95_1_161 BeH 20 -2.2 0.85
ASTRAL95_1_161 SoH 20 -1.8 0.83
\