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Table 2 Evaluation of the WGCEP model. The best F-measures for each dataset and each similarity function. ASTRAL95_1_161 and ASTRAL95_2_161 are as in Table 1. ASTRAL95_1_171 and ASTRAL95_2_171 refer to the updated ASTRAL95 data of SCOP v1.71. BeH or SoH denote the similarity function, while the coverage factor f represents the influence of the coverage to the similarity.

From: Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing

Dataset

Similarity

Factor f

Threshold

F-measure

ASTRAL95_1_171

SoH

18

-3.0

0.91

ASTRAL95_1_171

BeH

15

-3.4

0.90

ASTRAL95_2_161

SoH

19

-1.6

0.89

ASTRAL95_2_171

SoH

15

-3.2

0.88

ASTRAL95_2_161

BeH

14

-2.4

0.87

ASTRAL95_2_171

BeH

13

-2.6

0.85

ASTRAL95_1_161

BeH

20

-2.2

0.85

ASTRAL95_1_161

SoH

20

-1.8

0.83