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Figure 2 | BMC Bioinformatics

Figure 2

From: Strainer: software for analysis of population variation in community genomic datasets

Figure 2

Building variant sequences. Illustration of the variant enumeration algorithm. Data taken from Tyson et al. 2004 [1] for Ferroplasma type I. Starting with the read labeled (1), three different paths are shown (A, B, and C) that span the gene by linking reads which overlap with no differences. To determine the sequence variants present in the data, all paths are found using all possible starting reads.

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