From: fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Factor | Known Site | Condition | Motif | p-value | fREDUCE match? | AlignACE Match? |
---|---|---|---|---|---|---|
ABF1 | rTCAyt....Acg | YPD | rTGATm | 22.4 | √ | √ |
ACE2 | tGCTGGT | YPD | kGCTGGy | 6.2 | √ |  |
AFT2 | GGGTGy | H2O2Lo | rGGTGy | 91.5 | √ | √ |
AZF1 | YwTTkcKkTyyckgykky | YPD | mTTTTw | 14.8 | Â | Â |
BAS1 | TGACTC | YPD | TGACTCCG | 37.2 | √ | √ |
CAD1 | mTTAsTmAkC | YPD | GmTTAsTA | 4.2 | √ | √ |
CBF1 | tCACGTG | YPD | CACGTG | 90.7 | √ | √ |
CIN5 | TTAygTAA | YPD | TTAyrTAA | 59.4 | √ | √ |
DAL82 | GATAAGa | RAPA | GATAAG | 9.4 | √ |  |
DIG1 | TgAAAca | YPD | TGAAACA | 18 | √ |  |
FHL1 | rTGTayGGrtg | YPD | GTAyGGrT | 141.2 | √ | √ |
FKH1 | tTgTTTac | YPD | yTGTTkAC | 28.8 | √ |  |
FKH2 | aaa.GTAAACAa | YPD | GTAAACA | 23.7 | √ | √ |
GAL4 | CGG...........cCg | YPD | TTCGGAGC | 4.9 |  | √ |
GAT1 | aGATAAG | RAPA | GATAAG | 13.3 | √ |  |
GCN4 | TGAsTCa | YPD | rTGAsTCA | 166.7 | √ | √ |
GLN3 | GATAAGa.a | RAPA | GATAAG | 38.2 | √ |  |
HAP1 | GGmraTA.CGs | YPD | kTTATCGG | 60.3 | √ | √ |
HAP4 | g.CcAAtcA | YPD | CCAATsAr | 21.7 | √ | √ |
HSF1 | TTCya.....TTC | H2O2Hi | TTCyrGAA | 109.5 | √ | √ |
IME1 | Â | H2O2Hi | Â | Â | Â | Â |
INO2 | CAcaTGc | YPD | kCACATGC | 12.8 | √ |  |
INO4 | CATGTGaaaa | YPD | CAyrTG | 89.2 | √ | √ |
LEU3 | cCGgtacCGG | YPD | CGGkACCG | 10.8 | √ | √ |
MBP1 | rACGCGt | YPD | ACGCGT | 126.9 | √ | √ |
MCM1 | tttCC.rAt..gg | Alpha | yTTCCTAA | 5.7 |  | √ |
MET4 | RMmAwsTGKSgyGsc | SM | CrCGyG | 14.8 | Â | Â |
MSN2 | mAGGGGsgg | H2O2Hi | rGGGGy | 20.8 | √ |  |
NDD1 | tt.CC.rAw..GG | YPD | CTCGAGGC | 12.3 |  | √ |
NRG1 | GGaCCCT | YPD | AGGGTCs | 11.3 | √ | √ |
PDR1 | ccGCCgRAwra | YPD | CCrwACAT | 11.4 | Â | Â |
PHD1 | sc.GC.gg | YPD | mTGCAk | 21.1 |  | √ |
PHO2 | SGTGCGsygyG | Pi- | Â | Â | Â | Â |
PHO4 | CACGTGs | Pi- | sCACGTGs | 14.1 | √ |  |
RAP1 | tGyayGGrtg | SM | GyrTGGGT | 57.1 | √ | √ |
RCS1 | ggGTGca.t | H2O2Lo | GGGTGCA | 43.6 | √ | √ |
RDS1 | kCGGCCGa | H2O2Hi | TCCGCGG | 35.6 | √ |  |
REB1 | CGGGTAA | YPD | CGGGTAAy | 136.7 | √ | √ |
RFX1 | TTgccATggCAAC | YPD | GTCGTCCG | 3.2 |  | √ |
RLR1 | ATTTTCttCwTt | YPD | Â | Â | Â | Â |
RPN4 | TTTGCCACC | H2O2Lo | TyGCCACC | 109.8 | √ | √ |
SFP1 | ayCcrtACay | SM | yCCrTACA | 31.6 | √ | √ |
SIG1 | ArGmAwCrAmAA | H2O2Hi | Â | Â | Â | Â |
SIP4 | CGG.y.AATGGrr | SM | CTCGGCCC | 58.4 | Â | Â |
SKN7 | G.C..GsCs | H2O2Lo | GsCyGGCC | 37.7 | √ |  |
SNT2 | yGGCGCTAyca | YPD | GrTAGCGC | 96.1 | √ | √ |
SOK2 | tGCAg..a | BUT14 | GGTrCAGA | 5.6 | Â | Â |
SPT2 | ymtGTmTytAw | YPD | TkyATA | 6.2 | Â | Â |
SPT23 | rAAATsaA | YPD | wTkAAA | 25.1 | Â | Â |
STB1 | rracGCsAaa | YPD | wCGCGT | 4 | √ |  |
STB4 | TCGg..CGA | YPD | CGGryCGA | 7.1 | √ | √ |
STB5 | CGGwstTAta | YPD | CGGkGwTA | 24 | √ |  |
STE12 | tgAAACa | YPD | TGAAACA | 38.9 | √ | √ |
SUM1 | gyGwCAswaaw | YPD | GyGTCAs | 25.0 | √ | √ |
SUT1 | gcsGsg..sG | YPD | wCkCCG | 49.8 | Â | Â |
SWI4 | raCgCsAAA | YPD | CGCsAAAA | 12.6 | √ | √ |
SWI6 | tttcGCGt | YPD | TTTCsk | 11.6 | √ |  |
TEC1 | rrGAATG | YPD | rrGAATGT | 22.4 | √ |  |
THI2 | gmAAcy.twAgA | Thi- | GGAAACyS | 4.5 | √ |  |
TYE7 | tCACGTGAy | YPD | TCACGTGr | 70.8 | √ | √ |
UME6 | taGCCGCCsa | YPD | GCsGCy | 154.3 | √ | √ |
YAP1 | TTaGTmAGc | YPD | mTkACTAA | 13.6 | √ | √ |
YAP7 | mTkAsTmAk | H2O2Hi | mTTAsTAA | 121.9 | √ | √ |
YDR026c | ttTACCCGGm | YPD | CCGGGTAA | 23.2 | √ | √ |
ZAP1 | ACCCTmAAGGTyrT | YPD | wAyATT | 16.5 | Â | Â |