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Table 2 Top scoring features in branch site interval

From: Features generated for computational splice-site prediction correspond to functional elements

FGA A-3mer3 [-40,-20] features Weight
------------ctgacc------- 0.1800
-----------ctgacc-------- 0.1678
----------------ctgacc--- 0.1488
----------ctgacc--------- 0.1453
-------------cctgac------ 0.1417
---------------cctgac---- 0.1382
----------------tgaccc--- 0.1371
--------ctgacc----------- 0.1370
-----------------cctgac-- 0.1368
------ctgacc------------- 0.1359
--------------ctgacc----- 0.1358
-------------------tctctc 0.1303
------------------ccttct- 0.1283
-------------------cttttc 0.1281
------------------cttttt- 0.1281
-------------ctcacc------ 0.1254
-----------ctcacc-------- 0.1219
---------------ctgact---- 0.1206
-----------cctgac-------- 0.1202
-------------------tccctc 0.1200
  1. The 20 top-scoring A -3mer 3 [-40,-20] features (i.e. composite features that start in the interval between -40 and -25 derived using FGA from a seed of trimers) are all related to either the branch-site consensus or the pyrimidine tract.