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Table 2 Top scoring features in branch site interval

From: Features generated for computational splice-site prediction correspond to functional elements

FGA A-3mer3 [-40,-20] features

Weight

------------ctgacc-------

0.1800

-----------ctgacc--------

0.1678

----------------ctgacc---

0.1488

----------ctgacc---------

0.1453

-------------cctgac------

0.1417

---------------cctgac----

0.1382

----------------tgaccc---

0.1371

--------ctgacc-----------

0.1370

-----------------cctgac--

0.1368

------ctgacc-------------

0.1359

--------------ctgacc-----

0.1358

-------------------tctctc

0.1303

------------------ccttct-

0.1283

-------------------cttttc

0.1281

------------------cttttt-

0.1281

-------------ctcacc------

0.1254

-----------ctcacc--------

0.1219

---------------ctgact----

0.1206

-----------cctgac--------

0.1202

-------------------tccctc

0.1200

  1. The 20 top-scoring A -3mer 3 [-40,-20] features (i.e. composite features that start in the interval between -40 and -25 derived using FGA from a seed of trimers) are all related to either the branch-site consensus or the pyrimidine tract.
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