Skip to main content

Table 1 Inter-platform correlation coefficients: the sample and fold-change correlation coefficients between platforms.

From: Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data

 

Sample Correlations

Fold-change Correlation

Correlation

A

B

C

D

B/A

C/A

D/A

C/B

D/B

D/C

Minimum

0.56

0.49

0.50

0.45

0.78

0.53

0.71

0.73

0.59

0.61

25%tile

0.63

0.58

0.60

0.57

0.83

0.73

0.81

0.81

0.76

0.76

Median

0.74

0.70

0.71

0.68

0.85

0.75

0.82

0.84

0.78

0.78

Mean

0.71

0.66

0.68

0.65

0.86

0.74

0.82

0.84

0.77

0.78

75%tile

0.77

0.74

0.74

0.72

0.89

0.80

0.87

0.88

0.83

0.82

Maximum

0.82

0.81

0.80

0.80

0.92

0.85

0.90

0.91

0.87

0.88

  1. For each sample (A, B, C, or D) and each fold-change (B/A, C/A, D/A, C/B, D/B, or D/C) all pairwise inter platform correlations were computed. For each sample correlation coefficient, up to 2250 correlation coefficients were computed; for each fold-change correlation, 90 correlations were computed.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us