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Table 2 TaqMan and microarray platform comparability".

From: Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data

Table 2a. Summary of sample correlation coefficients of TAQ v.s.5 platforms

  

Minimum

25%tile

Median

Mean

75%tile

Manimum

AFX

A

0.763

0.776

0.783

0.782

0.791

0.797

 

B

0.749

0.763

0.774

0.771

0.778

0.785

 

C

0.722

0.74

0.744

0.745

0.751

0.762

 

D

0.715

0.725

0.731

0.733

0.74

0.755

ABI

A

0.73

0.746

0.754

0.755

0.763

0.78

 

B

0.656

0.686

0.707

0.701

0.717

0.737

 

C

0.684

0.698

0.71

0.711

0.725

0.736

 

D

0.644

0.661

0.671

0.674

0.685

0.717

AG1

A

0.718

0.731

0.737

0.74

0.752

0.76

 

B

0.699

0.704

0.709

0.713

0.724

0.734

 

C

0.67

0.68

0.685

0.687

0.697

0.706

 

D

0.636

0.649

0.654

0.656

0.662

0.673

ILM

A

0.727

0.746

0.758

0.755

0.763

0.771

 

B

0.703

0.715

0.744

0.738

0.756

0.761

 

C

0.685

0.692

0.711

0.706

0.716

0.725

 

D

0.666

0.675

0.694

0.69

0.704

0.709

GEH

A

0.583

0.626

0.66

0.651

0.67

0.7

 

B

0.518

0.542

0.619

0.598

0.63

0.65

 

C

0.502

0.525

0.608

0.587

0.623

0.638

 

D

0.455

0.468

0.57

0.542

0.584

0.609

Table 2b. Summary of fold-change correlation coefficients of TAQ v.s.5 platforms

  

Minimum

25%tile

Median

Mean

75%tile

Manimum

AFX

B/A

0.885

0.888

0.892

0.891

0.893

0.895

 

C/A

0.81

0.824

0.838

0.831

0.841

0.844

 

D/A

0.867

0.868

0.869

0.871

0.872

0.875

 

C/B

0.867

0.87

0.874

0.874

0.878

0.882

 

D/B

0.86

0.861

0.862

0.866

0.868

0.875

 

C/B

0.825

0.83

0.836

0.832

0.836

0.836

ABI

B/A

0.858

0.858

0.859

0.863

0.865

0.872

 

C/A

0.715

0.72

0.725

0.729

0.736

0.748

 

D/A

0.794

0.795

0.797

0.805

0.81

0.824

 

C/B

0.867

0.868

0.869

0.87

0.871

0.873

 

D/B

0.833

0.842

0.852

0.846

0.853

0.854

 

C/B

0.776

0.785

0.794

0.788

0.795

0.796

AG1

B/A

0.878

0.879

0.88

0.884

0.887

0.893

 

C/A

0.741

0.753

0.765

0.763

0.774

0.783

 

D/A

0.827

0.831

0.835

0.836

0.84

0.845

 

C/B

0.87

0.877

0.884

0.88

0.885

0.887

 

D/B

0.849

0.853

0.856

0.855

0.857

0.858

 

C/B

0.81

0.811

0.811

0.815

0.818

0.824

ILM

B/A

0.878

0.886

0.894

0.891

0.898

0.903

 

C/A

0.75

0.758

0.767

0.771

0.782

0.797

 

D/A

0.827

0.836

0.845

0.845

0.854

0.863

 

C/B

0.882

0.888

0.893

0.891

0.896

0.899

 

D/B

0.871

0.876

0.88

0.882

0.887

0.893

 

C/B

0.823

0.827

0.831

0.831

0.835

0.839

GEH

B/A

0.818

0.838

0.858

0.845

0.859

0.859

 

C/A

0.603

0.665

0.726

0.69

0.733

0.741

 

D/A

0.709

0.751

0.793

0.768

0.798

0.803

 

C/B

0.782

0.824

0.866

0.839

0.867

0.869

 

D/B

0.726

0.787

0.848

0.809

0.851

0.854

 

C/B

0.594

0.691

0.787

0.724

0.789

0.79