From: Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data
Table 2a. Summary of sample correlation coefficients of TAQ v.s.5 platforms | |||||||
---|---|---|---|---|---|---|---|
 |  | Minimum | 25%tile | Median | Mean | 75%tile | Manimum |
AFX | A | 0.763 | 0.776 | 0.783 | 0.782 | 0.791 | 0.797 |
 | B | 0.749 | 0.763 | 0.774 | 0.771 | 0.778 | 0.785 |
 | C | 0.722 | 0.74 | 0.744 | 0.745 | 0.751 | 0.762 |
 | D | 0.715 | 0.725 | 0.731 | 0.733 | 0.74 | 0.755 |
ABI | A | 0.73 | 0.746 | 0.754 | 0.755 | 0.763 | 0.78 |
 | B | 0.656 | 0.686 | 0.707 | 0.701 | 0.717 | 0.737 |
 | C | 0.684 | 0.698 | 0.71 | 0.711 | 0.725 | 0.736 |
 | D | 0.644 | 0.661 | 0.671 | 0.674 | 0.685 | 0.717 |
AG1 | A | 0.718 | 0.731 | 0.737 | 0.74 | 0.752 | 0.76 |
 | B | 0.699 | 0.704 | 0.709 | 0.713 | 0.724 | 0.734 |
 | C | 0.67 | 0.68 | 0.685 | 0.687 | 0.697 | 0.706 |
 | D | 0.636 | 0.649 | 0.654 | 0.656 | 0.662 | 0.673 |
ILM | A | 0.727 | 0.746 | 0.758 | 0.755 | 0.763 | 0.771 |
 | B | 0.703 | 0.715 | 0.744 | 0.738 | 0.756 | 0.761 |
 | C | 0.685 | 0.692 | 0.711 | 0.706 | 0.716 | 0.725 |
 | D | 0.666 | 0.675 | 0.694 | 0.69 | 0.704 | 0.709 |
GEH | A | 0.583 | 0.626 | 0.66 | 0.651 | 0.67 | 0.7 |
 | B | 0.518 | 0.542 | 0.619 | 0.598 | 0.63 | 0.65 |
 | C | 0.502 | 0.525 | 0.608 | 0.587 | 0.623 | 0.638 |
 | D | 0.455 | 0.468 | 0.57 | 0.542 | 0.584 | 0.609 |
Table 2b. Summary of fold-change correlation coefficients of TAQ v.s.5 platforms | |||||||
 |  | Minimum | 25%tile | Median | Mean | 75%tile | Manimum |
AFX | B/A | 0.885 | 0.888 | 0.892 | 0.891 | 0.893 | 0.895 |
 | C/A | 0.81 | 0.824 | 0.838 | 0.831 | 0.841 | 0.844 |
 | D/A | 0.867 | 0.868 | 0.869 | 0.871 | 0.872 | 0.875 |
 | C/B | 0.867 | 0.87 | 0.874 | 0.874 | 0.878 | 0.882 |
 | D/B | 0.86 | 0.861 | 0.862 | 0.866 | 0.868 | 0.875 |
 | C/B | 0.825 | 0.83 | 0.836 | 0.832 | 0.836 | 0.836 |
ABI | B/A | 0.858 | 0.858 | 0.859 | 0.863 | 0.865 | 0.872 |
 | C/A | 0.715 | 0.72 | 0.725 | 0.729 | 0.736 | 0.748 |
 | D/A | 0.794 | 0.795 | 0.797 | 0.805 | 0.81 | 0.824 |
 | C/B | 0.867 | 0.868 | 0.869 | 0.87 | 0.871 | 0.873 |
 | D/B | 0.833 | 0.842 | 0.852 | 0.846 | 0.853 | 0.854 |
 | C/B | 0.776 | 0.785 | 0.794 | 0.788 | 0.795 | 0.796 |
AG1 | B/A | 0.878 | 0.879 | 0.88 | 0.884 | 0.887 | 0.893 |
 | C/A | 0.741 | 0.753 | 0.765 | 0.763 | 0.774 | 0.783 |
 | D/A | 0.827 | 0.831 | 0.835 | 0.836 | 0.84 | 0.845 |
 | C/B | 0.87 | 0.877 | 0.884 | 0.88 | 0.885 | 0.887 |
 | D/B | 0.849 | 0.853 | 0.856 | 0.855 | 0.857 | 0.858 |
 | C/B | 0.81 | 0.811 | 0.811 | 0.815 | 0.818 | 0.824 |
ILM | B/A | 0.878 | 0.886 | 0.894 | 0.891 | 0.898 | 0.903 |
 | C/A | 0.75 | 0.758 | 0.767 | 0.771 | 0.782 | 0.797 |
 | D/A | 0.827 | 0.836 | 0.845 | 0.845 | 0.854 | 0.863 |
 | C/B | 0.882 | 0.888 | 0.893 | 0.891 | 0.896 | 0.899 |
 | D/B | 0.871 | 0.876 | 0.88 | 0.882 | 0.887 | 0.893 |
 | C/B | 0.823 | 0.827 | 0.831 | 0.831 | 0.835 | 0.839 |
GEH | B/A | 0.818 | 0.838 | 0.858 | 0.845 | 0.859 | 0.859 |
 | C/A | 0.603 | 0.665 | 0.726 | 0.69 | 0.733 | 0.741 |
 | D/A | 0.709 | 0.751 | 0.793 | 0.768 | 0.798 | 0.803 |
 | C/B | 0.782 | 0.824 | 0.866 | 0.839 | 0.867 | 0.869 |
 | D/B | 0.726 | 0.787 | 0.848 | 0.809 | 0.851 | 0.854 |
 | C/B | 0.594 | 0.691 | 0.787 | 0.724 | 0.789 | 0.79 |